MongoDB Operational Patterns#

MongoDB operations center on three areas: keeping the cluster healthy (replica sets and sharding), protecting data (backups), and keeping queries fast (indexes and explain plans). This reference covers the practical commands and patterns for each.

Replica Set Setup#

A replica set is the minimum production deployment – three data-bearing members that elect a primary and maintain identical copies of the data.

Launching Members#

Each member runs mongod with the same --replSet name:

MySQL 8.x Setup and Configuration#

MySQL 8.x is the current production series. It introduced caching_sha2_password as the default auth plugin, CTEs, window functions, and a redesigned data dictionary. Getting it installed is straightforward; getting it configured correctly for production takes more thought.

Installation#

Package Managers#

On Ubuntu/Debian, the MySQL APT repository gives you the latest 8.x:

# Add the MySQL APT repo
wget https://dev.mysql.com/get/mysql-apt-config_0.8.30-1_all.deb
sudo dpkg -i mysql-apt-config_0.8.30-1_all.deb
sudo apt update
sudo apt install mysql-server

On RHEL/Rocky/AlmaLinux:

MySQL Backup and Recovery#

A backup that has never been restored is not a backup. This guide covers the tools, when to use each, and how to verify your backups work.

Logical vs Physical Backups#

Logical backups export SQL statements. Portable across versions but slow for large databases. Physical backups copy raw InnoDB data files. Fast but tied to the same MySQL version. Physical backups are essential once your database exceeds a few hundred gigabytes.

MySQL Debugging: Common Problems and Solutions#

When MySQL breaks, it falls into a handful of failure modes. Here are the diagnostic workflows, in order of frequency.

Access Denied Errors#

Access denied for user 'appuser'@'10.0.1.5' (using password: YES) means wrong password, user does not exist for that host, or missing privileges.

Diagnosis:

-- 1. Does the user exist for that host?
SELECT user, host, plugin FROM mysql.user WHERE user = 'appuser';
-- MySQL matches user+host pairs. 'appuser'@'localhost' != 'appuser'@'%'.

-- 2. Check grants
SHOW GRANTS FOR 'appuser'@'%';

-- 3. Auth plugin mismatch? Old clients can't handle caching_sha2_password:
ALTER USER 'appuser'@'%' IDENTIFIED WITH mysql_native_password BY 'password';

To reset a lost root password:

MySQL Performance Tuning#

Performance tuning comes down to three things: making queries touch fewer rows (indexes), keeping hot data in memory (buffer pool), and finding the slow queries (slow query log, Performance Schema).

Reading EXPLAIN Output#

EXPLAIN shows MySQL’s query execution plan. Always use EXPLAIN ANALYZE (MySQL 8.0.18+) for actual runtime stats, not just estimates.

EXPLAIN ANALYZE
SELECT u.name, COUNT(o.id) as order_count
FROM users u
JOIN orders o ON o.user_id = u.id
WHERE u.created_at > '2025-01-01'
GROUP BY u.id;

Key columns:

Planning and Executing Database Migrations#

Database migrations are the highest-risk routine operations most teams perform. A bad migration can cause downtime, data loss, or application errors that cascade across every service that touches the affected tables. This operational sequence walks through the assessment, planning, execution, and rollback of database migrations from simple column additions to full platform changes.

Phase 1 – Assessment#

Step 1: Classify the Migration#

Every migration falls into one of three categories, each with a different risk profile:

PostgreSQL Backup and Recovery#

A backup you have never tested restoring is not a backup. This covers the main backup tools, when to use each, point-in-time recovery, and automation.

Logical Backups: pg_dump and pg_dumpall#

pg_dump exports a single database as SQL or a compressed binary format. It takes a consistent snapshot without blocking writes.

# Custom format (compressed, supports parallel restore)
pg_dump -U postgres -Fc -d myapp -f myapp.dump

# Directory format (parallel dump)
pg_dump -U postgres -Fd -j 4 -d myapp -f myapp_dir/

pg_dumpall exports every database plus cluster-wide objects. In practice, dump roles separately and per-database for flexibility:

PostgreSQL Debugging#

When PostgreSQL breaks, it usually falls into a handful of patterns. This is a reference for diagnosing each one with specific queries and commands.

Connection Refused#

Work through these in order:

1. Is PostgreSQL running?

sudo systemctl status postgresql-16

2. Is it listening on the right address?

ss -tlnp | grep 5432

If it shows 127.0.0.1:5432 but you need remote access, set listen_addresses = '*' in postgresql.conf.

3. Does pg_hba.conf allow the connection? Check logs for no pg_hba.conf entry for host:

PostgreSQL Performance Tuning#

Most PostgreSQL performance problems come from missing indexes, bad query plans, connection overhead, or table bloat. This covers how to diagnose each one.

Reading EXPLAIN ANALYZE#

EXPLAIN shows the query plan. EXPLAIN ANALYZE actually executes the query and shows real timings.

EXPLAIN ANALYZE SELECT * FROM orders WHERE customer_id = 42 AND status = 'pending';

Index Scan using idx_orders_customer on orders  (cost=0.43..8.45 rows=1 width=120) (actual time=0.023..0.025 rows=3 loops=1)
  Index Cond: (customer_id = 42)
  Filter: (status = 'pending'::text)
  Rows Removed by Filter: 12
Planning Time: 0.152 ms
Execution Time: 0.048 ms

What to look for: Seq Scan on large tables means a missing index. Rows Removed by Filter means the index fetched extra rows that a composite index would eliminate. actual rows far from estimated rows means stale statistics – run ANALYZE tablename;. Nested Loop with high loops count usually wants a hash join; check the inner table’s indexes.

PostgreSQL Replication#

Streaming replication gives you a full binary copy for high availability and read scaling. Logical replication gives you selective table-level syncing between databases that can run different PostgreSQL versions.

Streaming Replication Setup#

Configure the Primary#

# postgresql.conf
wal_level = replica
max_wal_senders = 5
wal_keep_size = 1GB

Create a replication role and allow connections:

CREATE ROLE replicator WITH REPLICATION LOGIN PASSWORD 'repl-secret';

# pg_hba.conf
host  replication  replicator  10.0.0.0/8  scram-sha-256

Initialize the Standby#

sudo systemctl stop postgresql-16
sudo rm -rf /var/lib/postgresql/16/main/*
pg_basebackup -h primary-host -U replicator -D /var/lib/postgresql/16/main \
  --checkpoint=fast --wal-method=stream -R -P
sudo chown -R postgres:postgres /var/lib/postgresql/16/main
sudo systemctl start postgresql-16

The -R flag creates standby.signal and writes connection info to postgresql.auto.conf. The standby now continuously receives and replays WAL from the primary, accepting read-only queries by default.